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CIRAD 2006

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Annual Report: CIRAD 2006

Understanding Preserving Sharing Innovating Anticipating

Understanding

OryGenesDB, discovering the function of rice genes

Rice, a model plant for studying monocots © J.E. Taillebois/CIRAD

The complete rice genome sequence has now been mapped. It comprises 40 000 to 60 000 genes. The next step is to determine its biological function, through functional genomics studies. To facilitate these studies, CIRAD has recently set up a database, containing all the essential information on the rice genome, in particular the flanking sequence tags (FSTs) around the integration sites of mutagenes present in insertion mutant collections. These tags serve to pinpoint gene functions by linking the gene and the phenotype directly, in a reverse genetics approach.

Genes involved in coffee quality

The sucrose accumulated in the beans is one of the organoleptic compounds in coffee © P. Marraccini/CIRAD

Sucrose plays a vital role in coffee organoleptic quality. A team from CIRAD and the Agricultural Institute of Paraná (IAPAR) in Brazil has recently identified the genes responsible for sucrose accumulation in coffee beans. This is a new step along the way to producing exceptional coffees.

Sugarcane smut: genetic diversity of the fungus and genetics of resistance

Sugarcane smut takes the form of a whip-like smutty growth at the tip of infected canes © J.-C. Girard/CIRAD

Smut is found in every zone in which sugarcane is grown, except for Papua New Guinea, which strangely enough is where the ancestral domesticated species Saccharum officinarum originated. Recent studies have provided a clearer picture of the genetic diversity of the fungus and the genetic determinism of sugarcane resistance.

Vanilla aroma and images

Histocytological section of a vanilla bean © J.L. Verdeil/Cirad

During fruit ripening, the glucovanillin that has accumulated in green vanilla beans is hydrolysed by a glucosidase, which releases vanilla aroma. However, there is some debate about the location of these two compounds within the bean. Using cellular imagery and the latest spectral deconvolution techniques, it will now be possible to identify these two metabolites very precisely in situ, and eventually to improve bean postharvest processing techniques.

Silicon boosts sugarcane resistance to borers

Eldana saccharina caterpillars bore galleries in canes, causing severe sugar and biomass losses © R. Goebel/CIRAD

The African stalk borer Eldana saccharina is one of the main sugarcane pests. A study by CIRAD and SASRI, in South Africa, has shown that silicon plays a role in sugarcane resistance, by triggering its natural defences, and that this role is more pronounced in the event of water stress. This work has opened the way for a new agrobiological control method.

At-risk landscapes and tsetse fly behaviour: the bases for vector control strategies

Treating cattle using an acaricide-insecticide foot bath, in Burkina Faso © J. Bouyer/CIRAD

In sub-Saharan Africa, animal trypanosomoses transmitted by tsetse flies have considerable economic consequences for the animal production sector. To control these diseases, it is vital to understand the ecology of tsetse flies, and particularly the factors that affect their vectorial capacity. Studies are under way, primarily in Burkina Faso, to determine these factors.

A fruit and vegetable polyphenol composition table

Potatoes, lettuce and onions are the main vegetable sources of polyphenols in the French diet © J. Weber/Inra

Polyphenols, which are primarily found in fruit and vegetables, are the object of growing interest for their potential role in preventing certain diseases. However, there had never been a table giving the polyphenol compositions of foods eaten in France, until a vast project was launched to produce such a tool, to be used in future epidemiological studies.

Summary:

  • OryGenesDB, discovering the function of rice genes
  • Genes involved in coffee quality
  • Le paradoxe du café
  • Sugarcane smut: genetic diversity of the fungus and genetics of resistance
  • Vanilla aroma and images
  • Silicon boosts sugarcane resistance to borers
  • At-risk landscapes and tsetse fly behaviour: the bases for vector control strategies
  • A fruit and vegetable polyphenol composition table

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